Some modules assume that a full path is given, so when a single file name is given, there is an error. Example (doSchemaMapping::parseInput()):
String temporalBundleDir = temporalBundle.substring(0,temporalBundle.lastIndexOf("/")) + "/";
But since there is no lastIndexOf a slash character (no slash character at all), an exception is thrown and everything breaks.
This happens in several files an in several locations per file, so maybe a routine in util should be written to take care of it.
Currently the workaround is to include "./" in all the file names, both in command line arguments and in XML documents. IE:
physicalAnnotation="./winolympic_phy_anno_fri.xml">
This also includes ValidatorProperties.java:
String fileName = "//Users//doofus//Documents//workspace//TXSchema_sthomas//config//properties.txt";